COXPRESdb | Tool name | COXPRESdb |
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| URL | http://coxpresdb.hgc.jp |
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| Important features | A database for co-expressed genes and networks in various species. Four types of co-expression networks can be generated: (i) highly co-expressed genes for every gene, (ii) genes with the same Gene Ontology annotation, (iii) genes expressed in the same tissue and (iv) user-defined gene sets. It also provides a view to compare the co-expression patterns across species to estimate the conservation between the two species. It helps in making gene lists for a particular biological function, and functional estimation of a gene. Currently it covers seven model animals and one plant model. |
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| Citations | Obayashi T, Hayashi S, Shibaoka M, Saeki M, Ohta H, Kinoshita K. COXPRESdb: a database of coexpressed gene networks in mammals. Nucleic Acids Res. 2008 Jan;36(Database issue):D77-82. Epub 2007 Oct 11. PubMed PMID: 17932064; PubMed Central PMCID: PMC2238883. |
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| Year of publication | 2007 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Microarray, Human, Mouse, Rat, Plant, Multiple species |
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| Category | Online, Free |
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| Working status | Functional |
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| Other features | |
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| Other citations | Obayashi T, Kinoshita K. COXPRESdb: a database to compare gene coexpression in seven model animals. Nucleic Acids Res. 2011 Jan;39(Database issue):D1016-22. Epub 2010 Nov 16. PubMed PMID: 21081562; PubMed Central PMCID: PMC3013720. |
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